rs248583975 SNP Detail

Summary

• ID
  rs248583975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTGAGC CGCGGGTCTG
  GGCATCCCCG GACCCTGGGT CTTGCGCCTG AGTCTATCTG CTGCTGGGGG CATGGGGCGG
  GAAGGGGCGG GGTCTGGGGC GGTGTCCCAG AGAGGAGGCG GAGCCGGAGC CGGAGCCGGT
  GCTCCCAAGG CGTGCAGTAG TTGTACTTAG CTGGTCCTGG GGCAGCAGCG GGAAGGGACT
  R
  AAGAGGGGTG CTGAGGTGAA AGATTGGAAG ACCCGGAAAG ATCAGCTAGA TTTCGGAAAC
  CAGAAACACC CTCGGGGAGA CCTGGGGCTC CCGGCGCGCG ACGATTTCCT CGCACTAGCT
  GGGAGAGCGT TGATCCCATG GCCAGGATTC CGAGGTGCGA TTTTCTCCGG CCCCCCGGAA
  TCTACTATCT TATTACTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536812	CHEV_10_128370907	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248583975					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	within coordinates
Gm67752	predicted gene, 67752	1954 bp downstream
Itga7	integrin alpha 7	within coordinates
Rr441374	regulatory region 441374	21 bp distal
Rr441375	regulatory region 441375	1467 bp proximal
Rr441376	regulatory region 441376	1737 bp proximal
Tssr96480	transcription start site region 96480	88 bp downstream
Tssr96481	transcription start site region 96481	70 bp downstream
Tssr96482	transcription start site region 96482	23 bp downstream