rs248586038 SNP Detail

Summary

• ID
  rs248586038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24659056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTGCTATG CTGGGGATTG GGAGGTAGCA TTAGTGTGAG
  CCCAGGGTCT TCAGGAGAGA TGAGGTGGGG TTTTTTCCCT TAGATTCAGA GGGTGAGGCC
  R
  GAAGAGACTG TTCTCTGAGC TTCCCTGTTC CTAGAGGAAG TGTCAAGTTC CTCATCAACT
  CCCAAGATGA TTTCCCGTGC CTTTTTAGGA GGCTGAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495786	CHEV_5_23959876	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248586038					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24659056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3			Intron
				Noncoding-Transcript-Variant
Cpgi15603	CpG island 15603			740 bp distal
Rr608324	regulatory region 608324			1841 bp distal
Rr608325	regulatory region 608325			944 bp distal
Rr608326	regulatory region 608326			473 bp distal