rs248587254 SNP Detail

Summary

• ID
  rs248587254
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67061865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAATTTA TTTTGATCAT
  ATTCTTTCTC TTCCCCCAGT CCCTCCCAGA TCCTCTCCAC CTCCACACCC GCCTGACTAA
  ATGTTCTTTC TCTCTCAAAA AAAAAGGGAA AAAGAAAATC AGGAAGAGCA ATAACAAAGC
  AAAAAATAAA ATCAAAACAA ACTAAAAAAA AAAAAAAAAA GAAAAAAAGA AAGAAAGAAA
  G
  AAAAGAAAAT CAGACCAAAG AAAAGCGAAC ACAAAACAAA ACACACACAC ACACACAAAG
  ATGGGGTTCA TTTTGTGTTG GTCTACTACT CTCGGGCATG GGGACTGTGC TGGAGTGTGG
  TGTGGTTGAT CGGCCCAGTG ACACTTCTAG CTTTGCAGGA AACTGATCAT TCTTCTCCCC
  ATCAGGTGTC AACTGCGAAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss377898650	MGP_WTSI_9_67002390	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs248587254					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377898650	MGP_WTSI_9_67002390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67061865 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	982 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	979 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	758 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	1802 bp downstream
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	893 bp distal
Rr681888	regulatory region 681888	458 bp distal
Tssr90326	transcription start site region 90326	636 bp downstream
Tssr90327	transcription start site region 90327	663 bp downstream