rs248604018 SNP Detail

Summary

• ID
  rs248604018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagttcgag gccagcctct tcaacaaagt
  gagttctagg acagccagag ctacagagaa accctgtctc aaaaaaccaa aaaaacaaac
  aaacaaacaa aaaacaaaAA TTGTgggctt gagaaatggc tcagtggtta ggagcactga
  Y
  tgcttttcca gaagtcctga gttcacctcc cagcaaccac atggtggctc acaaccatct
  gtaacgggat ccgatgccct cttctggtgc tgactgaaga cagctacagt gtataaataa
  ataaataaat ctttaaaaaa gaaaaaaaGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699333	CHEV_11_59621794	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248604018					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2968	CpG island 2968			1244 bp proximal
Flcn	folliculin			Intron
				Noncoding-Transcript-Variant
Gm16062	predicted gene 16062			1788 bp upstream
Rr448261	regulatory region 448261			71 bp proximal
Rr448262	regulatory region 448262			232 bp proximal
Rr448263	regulatory region 448263			1286 bp proximal
Rr448264	regulatory region 448264			1570 bp proximal
Rr448265	regulatory region 448265			1714 bp proximal
Tssr101863	transcription start site region 101863			1815 bp upstream
Tssr101864	transcription start site region 101864			1995 bp upstream
Tssr108246	transcription start site region 108246			1482 bp downstream
Tssr108247	transcription start site region 108247			1734 bp downstream