rs248610480 SNP Detail

Summary

• ID
  rs248610480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116389651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGCCAC ACTAACCACA
  GGCGATCTGA TTTTTCCCTC TTTTACTAAT AACTTTTTAG TTGTTAGTTT CTGTGAACAT
  TACATTTTCT CATTTGCTAA ATTGATTTAA TATGTCTAGC TGTTCATTTG ATTGCAATGA
  AGACCAGGTG TGAAAATGTT TGTAGAAACT AAACGGTGAA AAAAATGTTG AATTAAAAAA
  M
  AACAAAAACA AAAAGAAGAC ACTGATGTAT TGAGTCGCTG GACTGTTAAA CTGTGGTATG
  CGATTTAAAA TTAGGTCCAG AATCAACCAG CAAAGCAGTC AGAAAAATGG ACTTAAAACA
  TCAGCCGTAT ATAGGAATCT GTAGGTTATT TAATTGTCTT ATTGTTTGTT TGATTTTGAC
  AGTTGAAGTG GTGCCCTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895821	CHEV_3_116298920	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248610480					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116389651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	470 bp distal
Rr397965	regulatory region 397965	938 bp downstream
Rr583746	regulatory region 583746	1531 bp distal
Rr583747	regulatory region 583747	1234 bp distal
Rr583748	regulatory region 583748	982 bp distal
Rr583749	regulatory region 583749	157 bp distal
Rr583750	regulatory region 583750	792 bp distal
Sass6	SAS-6 centriolar assembly protein	within coordinates
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	971 bp downstream
Tssr35316	transcription start site region 35316	1161 bp upstream
Tssr35317	transcription start site region 35317	1104 bp upstream