rs248613365 SNP Detail

Summary

• ID
  rs248613365
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:79755400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCCCG CCCCCCAACT
  ACCTCCCCGC TCCTGCCAGT GTCTGCCTGT CTGCCCCCAC GGGGGTTTAT TTGATCTCAC
  ATTAACCAAG GAGGAGAATG TGAGAAAAGG GGGAAAATGC CCAGGAGGAA GCAGGAGCAG
  CCCAAGCGCC TTCCCTCACG TAAGTCATCC CTTCTCCACC TCCTCTCGTG CCATTTTCTC
  K
  CCCTCCCTCT CCTCTTTCCC CTCCGCAGCC TCCGCCGTTG TTTTCTGCAT TAGTTTAGGG
  TTACAGAGGT GAAACTGACA AAGACACAGC CCGGGTTACT CCTCGTTTAG GTCTATGCCG
  AGGCAGCCAT GTTGGTGATG ATCAGCCCCG TGCCCTTTCT ATTCTCTCTC TCTTTTTCTT
  TCTTTCTCTC GACCCCCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322721751	CHEV_8_81552670	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248613365					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79755400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	342 bp distal
Cpgi20620	CpG island 20620	within coordinates
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	164 bp downstream
Rr665784	regulatory region 665784	174 bp distal
Rr665785	regulatory region 665785	within coordinates
Rr665786	regulatory region 665786	1338 bp proximal
Tssr2612	transcription start site region 2612	405 bp downstream
Tssr78123	transcription start site region 78123	793 bp downstream
Tssr78124	transcription start site region 78124	534 bp downstream
Tssr78125	transcription start site region 78125	462 bp downstream
Tssr78126	transcription start site region 78126	421 bp downstream
Tssr78127	transcription start site region 78127	158 bp downstream
Tssr78128	transcription start site region 78128	117 bp downstream
Zfp827	zinc finger protein 827	Intron