rs248614417 SNP Detail

Summary

• ID
  rs248614417
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGAAATT GGGAGGGAAA
  ATCAGTGAGG TGGATAGGAG CAGGTTGTAG TGAGGAGAGT AAGGATGGGT TCATTAAAAG
  TGAATTATAT AAATGCACAA AATTTTCAAA CAAAAATAAT TTTAAAAAGA GAAGTCAAAT
  GTGTGGTTGT AAGATATATT TGTATTTAAA ATAAGGTTAT CAATTTCAAA ATCAGATTGT
  K
  AGAAAGTCTA ATAGAAGTGC TCGTAATGAG TGCTAATATG TCAAATTAAT TTATTTAGTT
  TAATTTTCCT ACTCAAGGAT ACATGTTTAT TACAATGTGT GACTGCTGCT GAAGGTTCCT
  TTAGGGCTTT GTCTGGAAGA AACATGGTCT ATATTGACAG AATATCATGC AATAAATGCA
  GTCCTGAGAC AGAAAAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922375	MGP_WTSI_6_123232651	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248614417					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922375	MGP_WTSI_6_123232651	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259592 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	97 bp upstream
Tssr58809	transcription start site region 58809	759 bp upstream
Tssr58810	transcription start site region 58810	785 bp upstream
Tssr58811	transcription start site region 58811	821 bp upstream
Tssr63019	transcription start site region 63019	1061 bp upstream
Tssr63020	transcription start site region 63020	129 bp upstream
Tssr63021	transcription start site region 63021	51 bp upstream
Tssr63022	transcription start site region 63022	12 bp upstream
Tssr63023	transcription start site region 63023	9 bp downstream
Tssr63024	transcription start site region 63024	112 bp downstream
Tssr63025	transcription start site region 63025	165 bp downstream
Tssr63026	transcription start site region 63026	176 bp downstream
Tssr63027	transcription start site region 63027	225 bp downstream
Tssr63028	transcription start site region 63028	238 bp downstream
Tssr63029	transcription start site region 63029	269 bp downstream
Tssr63030	transcription start site region 63030	299 bp downstream
Tssr63031	transcription start site region 63031	356 bp downstream
Tssr63032	transcription start site region 63032	380 bp downstream
Tssr63033	transcription start site region 63033	405 bp downstream
Tssr63034	transcription start site region 63034	424 bp downstream
Tssr63035	transcription start site region 63035	445 bp downstream
Tssr63036	transcription start site region 63036	499 bp downstream
Tssr63037	transcription start site region 63037	529 bp downstream
Tssr63038	transcription start site region 63038	566 bp downstream
Tssr63039	transcription start site region 63039	625 bp downstream
Tssr63040	transcription start site region 63040	683 bp downstream
Tssr63041	transcription start site region 63041	732 bp downstream
Tssr63042	transcription start site region 63042	757 bp downstream
Tssr63043	transcription start site region 63043	767 bp downstream
Tssr63044	transcription start site region 63044	789 bp downstream
Tssr63045	transcription start site region 63045	880 bp downstream
Tssr63046	transcription start site region 63046	899 bp downstream
Tssr63047	transcription start site region 63047	922 bp downstream
Tssr63048	transcription start site region 63048	950 bp downstream
Tssr63049	transcription start site region 63049	965 bp downstream
Tssr63050	transcription start site region 63050	989 bp downstream
Tssr63051	transcription start site region 63051	1041 bp downstream