rs248616002 SNP Detail

Summary

• ID
  rs248616002
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACATCAGA TCAATGCTGC
  CATTAGCAGG GAACATGACA AAGTGGCCAA GGTTCTCAGC ATCTTCATCT CTCTGTGGGG
  GTGCAGGAAG GTTAAGGGGA GAGGATGTTA GGAACAGCAG GCACCTGGAA GCGCTCACAA
  GACTTCCTTC TGTACCTCCT TCATCCCAAA TTATCCCTGT CAAACTTGTT TTCTTTGAGC
  K
  GTGCATCTGC TCAGGTAGCT GTGTGTGCAT TTGTGTGTGC GCATGCACAC ATGTTCCTAT
  CTGCATGTCT GCAGATAGGG GTGGCCTATC TCCCATCAGA CTAGGTCTTC TAAGGGTGCT
  GACAACACGG TGAGGGCCTT CTAACTCCAC CATCAATCCC CAAGTTCTTA CCCCGTCCTT
  GGGAATCAGT CTCTGGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787324	MGP_WTSI_11_69415254	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248616002					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787324	MGP_WTSI_11_69415254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492578 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	296 bp downstream
Rr450035	regulatory region 450035	1090 bp distal
Tssr3544	transcription start site region 3544	1048 bp upstream
Tssr102487	transcription start site region 102487	1712 bp downstream
Tssr102488	transcription start site region 102488	549 bp downstream
Tssr102489	transcription start site region 102489	503 bp downstream
Tssr108712	transcription start site region 108712	1734 bp upstream
Tssr108713	transcription start site region 108713	1583 bp upstream
Tssr108714	transcription start site region 108714	1515 bp upstream
Tssr108715	transcription start site region 108715	1481 bp upstream
Tssr108716	transcription start site region 108716	1177 bp upstream
Tssr108717	transcription start site region 108717	1163 bp upstream
Tssr108718	transcription start site region 108718	1099 bp upstream
Tssr108719	transcription start site region 108719	1097 bp upstream
Tssr108720	transcription start site region 108720	1081 bp upstream
Tssr108721	transcription start site region 108721	1072 bp upstream
Tssr108722	transcription start site region 108722	994 bp upstream
Tssr108723	transcription start site region 108723	957 bp upstream
Tssr108724	transcription start site region 108724	911 bp upstream
Tssr108725	transcription start site region 108725	889 bp upstream
Tssr108726	transcription start site region 108726	787 bp upstream
Tssr108727	transcription start site region 108727	766 bp upstream
Tssr108728	transcription start site region 108728	722 bp upstream
Tssr108729	transcription start site region 108729	637 bp upstream
Tssr108730	transcription start site region 108730	605 bp upstream
Tssr108731	transcription start site region 108731	563 bp upstream
Tssr108732	transcription start site region 108732	502 bp upstream
Tssr108733	transcription start site region 108733	700 bp downstream
Tssr108734	transcription start site region 108734	991 bp downstream
Tssr108735	transcription start site region 108735	1058 bp downstream
Tssr108736	transcription start site region 108736	1096 bp downstream
Tssr108737	transcription start site region 108737	1786 bp downstream