rs248623612 SNP Detail

Summary

• ID
  rs248623612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGATTCG GGGTCGCGCC
  TCCGTGCTCC CTCCCTCTCC TCCCCCTCGC TCTCAGCCAG GCTGCGCGCT TCAGGAGCAG
  GCCTCGGGGA ACACATCACC CACCCCCGGG ATCCGCTGTC GAGGTGACAG CACCCTGGGT
  CGGCACAGGG GGCCGCCCTT GACTGCAAGG CACCCTCAGG CAGCAATGAG GACAACCCTG
  M
  GGGAGACAGA GAGTAGAGAC TGGAGGAGAC CGCCTTGGTG GCTTAGAATC TGTGGGTTTC
  ACATCTTCCC GCAGTAACTC AGCCGCAAGC CCTTCGCCGG CTGCAGTAGA TAGCGACTGT
  GCCCCGGCCT GCTGGGCCCT CCTGCCATCC TGTGGCCAAA GGGGTTTGCT TTAGAACCGT
  TAGGGAATTT ATCTGGGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391459031	MGP_WTSI_14_70475657	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248623612					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391459031	MGP_WTSI_14_70475657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	within coordinates
Cpgi6681	CpG island 6681	762 bp proximal
Egr3	early growth response 3	1467 bp upstream
Gm63137	predicted gene, 63137	124 bp downstream
Rr404186	regulatory region 404186	890 bp upstream
Rr494833	regulatory region 494833	732 bp distal
Rr494834	regulatory region 494834	992 bp distal
Rr494835	regulatory region 494835	138 bp distal
Rr494836	regulatory region 494836	863 bp proximal
Tssr126385	transcription start site region 126385	683 bp downstream
Tssr126386	transcription start site region 126386	651 bp downstream
Tssr126387	transcription start site region 126387	1057 bp upstream
Tssr126388	transcription start site region 126388	1076 bp upstream
Tssr126389	transcription start site region 126389	1318 bp upstream
Tssr126390	transcription start site region 126390	1356 bp upstream
Tssr126391	transcription start site region 126391	1456 bp upstream
Tssr126392	transcription start site region 126392	1525 bp upstream