rs248630308 SNP Detail

Summary

• ID
  rs248630308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112501474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCACCGC CTGGCAATAA
  AGAGAGAAAT TAATGCCACC AAAATTTTTC CTCCTCTTGT CACACTAGGA CTGATTACTA
  TTCAGTCTAC AAGTCTGTGT CCCTCTGGAC TGGGCTTTTT TTTCATGCAA ATCTGTACAA
  GCTTTCAACA TTAGAATTCC AAATCCTACA GTGGGGGTGG GGGGATGTGG GGGCTGGGGG
  R
  TGGGGCTGGT GGGGATCAGA TCTCAAGGCA AGATAATGTC ATCACATCTA CCTGGCTACT
  GTCCAAGAAC AAAATTCAGT TTAAGCACTG CTCCTGCAAA CAGCACGCAT CAGTTGTTAG
  GTGCTGTGCT CATTGCAGAA TGAGACTGAG AAAACAGGGA CACGGCCTCA ACAAAATGTC
  CAATCAGTGG CGTGCTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389998182	MGP_WTSI_13_113155148	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248630308					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389998182	MGP_WTSI_13_113155148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112501474 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
D13Mit260	DNA segment, Chr 13, Massachusetts Institute of Technology 260	656 bp proximal
Gm48837	predicted gene, 48837	296 bp upstream
Rr278287	regulatory region 278287	1640 bp proximal
Rr282338	regulatory region 282338	1274 bp distal
Rr282339	regulatory region 282339	528 bp proximal
Tssr121108	transcription start site region 121108	1504 bp downstream
Tssr121109	transcription start site region 121109	1472 bp downstream
Tssr121110	transcription start site region 121110	1204 bp upstream