rs248638990 SNP Detail

Summary

• ID
  rs248638990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79409031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTGAAA ATAATTTGAT
  GTTTCCTCAT ACTTAGTAGA TGAACAGAGG AGTTAACTTG GCAAGGGGGA ACTTTGGAAA
  GGTTTTCCAG AGATATTGAA GCAGATTTAA ATCTTAGAAT ACTATAAAGA GCTAGTTAAA
  CACATCTGTC TCCCAGCTTA GACAGTGTGC ACGGGCACCT GGGCAAGGCT CAGCATAGGC
  Y
  TGACAGCTAT CTTTCTGCGG GATGTCATAG ATGGTGAAAC TTTGAAGGCT TAAGTTCCGA
  AGTTCCGGCT GATACTGTCC ACTTAACTCA GTGTGTGAGG TCACCTATGT GTGTTGTTTT
  CAGTAGCCTC ACGCTCTAAA GTGACATTGT CAGTGCTGAG GATAATGGGC TCTTCTGGAC
  ATCCCCAAGC ATAGTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383980606	MGP_WTSI_11_79331707	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248638990					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383980606	MGP_WTSI_11_79331707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79409031 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247293	regulatory region 247293	1169 bp proximal
Rr402773	regulatory region 402773	1707 bp upstream
Tssr109489	transcription start site region 109489	1933 bp upstream
Tssr109490	transcription start site region 109490	1876 bp upstream
Tssr109491	transcription start site region 109491	1842 bp upstream
Tssr109492	transcription start site region 109492	1793 bp upstream
Tssr109493	transcription start site region 109493	1775 bp upstream
Tssr109494	transcription start site region 109494	1758 bp upstream
Tssr109495	transcription start site region 109495	1722 bp upstream
Tssr109496	transcription start site region 109496	1701 bp upstream
Tssr109497	transcription start site region 109497	1650 bp upstream
Tssr109498	transcription start site region 109498	1608 bp upstream
Tssr109499	transcription start site region 109499	1572 bp upstream
Tssr109500	transcription start site region 109500	1541 bp upstream
Tssr109501	transcription start site region 109501	1501 bp upstream
Tssr109502	transcription start site region 109502	1477 bp upstream
Tssr109503	transcription start site region 109503	1400 bp upstream
Tssr109504	transcription start site region 109504	466 bp downstream
Tssr109505	transcription start site region 109505	625 bp downstream
Tssr109506	transcription start site region 109506	1148 bp downstream