rs248642586 SNP Detail

Summary

• ID
  rs248642586
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4644979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTTCTG ATAAAAAAAT ATGTATTGTG
  CATCACCCAC TAAACTTCCT TTAGTATCAC AGTGTATCTC CCATGGTGGT catttataga
  gcacttacta atattatatt taaataagta tataaaacac tatgctcagt gttttatata
  S
  ttatttaaag cacatgaagg ccttgtaagt aatgtcctcc catcagatag ataagtaaaa
  tgttaacttt taactgactg ctctaggtct cggagctagt aagaacaagt gtcttgtttc
  agtttagaat tcttttaact tcagcaccta                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874157	CHEV_12_4601785	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248642586					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4644979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	1055 bp distal
Gm3625	predicted gene 3625	1248 bp upstream
Gm48678	predicted gene, 48678	361 bp downstream
Itsn2	intersectin 2	within coordinates
Rr265387	regulatory region 265387	378 bp distal
Tssr3767	transcription start site region 3767	1147 bp downstream
Tssr112561	transcription start site region 112561	1892 bp downstream
Tssr112562	transcription start site region 112562	1832 bp downstream
Tssr112563	transcription start site region 112563	1115 bp downstream
Tssr115638	transcription start site region 115638	1284 bp upstream
Tssr115639	transcription start site region 115639	1243 bp upstream
Tssr115640	transcription start site region 115640	1226 bp upstream
Tssr115641	transcription start site region 115641	1189 bp upstream
Tssr115642	transcription start site region 115642	1167 bp upstream
Tssr115643	transcription start site region 115643	174 bp downstream