rs248643640 SNP Detail

Summary

• ID
  rs248643640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178234169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGCCTC ATGGAGGACT
  GGAGCTGCGA CTAGAACCTG GCGGGATCCT CTGCGGCTGT GCCGAAACCC CGCCCAGCCC
  GGCCCAACCC GGCCCCAGCC GCCTCCATTT TGCCTCCTCC TCCGCCAGGC GGAGCGCAGC
  CTCCAGGTCA GACTGGGCCC TAGCGGCCCG GGTCGCGCTA GAGCCTTGCA TAAGGAACAC
  K
  CACTTTAATC ACTTTAAAGA AAACCCAGCC GGGACTTGTC GGGCCGCCCA GACCGGCCGG
  GTACCCGAGA GGCCTCAGGG GACCCGAAAA ACTAATGTTT CATGTTGAAC TGCAAGACCT
  TTTGAATTGT TGCTAACCCA GCCGAATGAC TTAAAATCGG ATCTGTGACT CAACAGCCAT
  TACGTGATAA ATTGACAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352536920	MGP_WTSI_1_180336735	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248643640					SNP	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352536920	MGP_WTSI_1_180336735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178234169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	within coordinates
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	176 bp upstream
Gm70923	predicted gene, 70923	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	584 bp downstream
Tssr10393	transcription start site region 10393	570 bp downstream
Tssr10394	transcription start site region 10394	559 bp downstream
Tssr10395	transcription start site region 10395	534 bp downstream
Tssr10396	transcription start site region 10396	499 bp downstream
Tssr10397	transcription start site region 10397	44 bp downstream
Tssr15493	transcription start site region 15493	165 bp upstream