rs248652130 SNP Detail

Summary

• ID
  rs248652130
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107464477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCCAG GACAGCCAGG
  GCTATACAGA GAAACCCTGT CTCAGAAAAA AAAAAAAAAA AAAAAAAGAA GCTTCCGGGT
  CAGTTCCAGG CATTTAAGGT GACTAGCCTA GGACTTTGTT CCTATACCCC AGCGTATCTA
  TAGAGAAGTA AAATCTAGGT TCAGACAACC CCTACATGCC TCCCAACACA CATCCCCCCC
  M
  AAAAAAATTA AGCTAAGGTC TGTTAAACGC TAAGCTATTA TCTGTATTTT TATCCATAAA
  GTCACTCTTT CATTACTTGA AGTTTGTCCT CACCATTCTA TCTAGGGCCA AACCTGGCGC
  CTCCAAGCAG GTGCTTCGTT ATCAGGCCCT GCAGACGCTT CTAGTGAGAA AGGAAACTAC
  TGAGTTAACT ATGAACCGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323191749	CHEV_9_107489609	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248652130					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107464477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	140 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	978 bp downstream
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	440 bp upstream
Rr401663	regulatory region 401663	59 bp upstream
Rr686552	regulatory region 686552	180 bp proximal
Rr686553	regulatory region 686553	375 bp proximal
Rr686554	regulatory region 686554	1369 bp proximal
Tssr87008	transcription start site region 87008	364 bp upstream
Tssr87009	transcription start site region 87009	395 bp upstream
Tssr87010	transcription start site region 87010	433 bp upstream
Tssr87011	transcription start site region 87011	479 bp upstream
Tssr87012	transcription start site region 87012	588 bp upstream