rs248657131 SNP Detail

Summary

• ID
  rs248657131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128658261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTCTTC TCATTGTTTT
  TATTACCTGC CACCCTTCCC TGCTCGGCTG TGAAGCGCCT TCTATCTTTT ATACCCCTTT
  CTCATTTAAT CTTCATTACG TCAGTGGTCC TTCCCCCGTG TCCCATGCTG ACCCAAAGTT
  ATGGTTTGTT TGTCCGTCCC CCCCGCCCCC CAACGGATTG ATGTAGTCAC TCCTCTTGTC
  Y
  CAAAGCTGGA ATTCCTCAGT TAACATATAG TGGCATTTTT GCATGTTTTG CTGAATATGT
  CCCAAACATA ACCCAGAAAG TGCTTCCGTT CTCTTTTAAC AAGGTGGGGT TAAGACCCCG
  CACTCGAATT TTTAAAATCA AGGAGAGGAG AGGCCTTAAG ATAGGTTTCT CGGTGGAAAC
  CTGGGGTAGA GGCTTCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382211310	MGP_WTSI_10_128259448	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248657131					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382211310	MGP_WTSI_10_128259448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128658261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	225 bp distal
Ormdl2	ORM1-like 2 (S. cerevisiae)	763 bp upstream
Rr402366	regulatory region 402366	570 bp downstream
Rr441331	regulatory region 441331	812 bp distal
Rr441332	regulatory region 441332	485 bp distal
Rr441333	regulatory region 441333	within coordinates
Rr441334	regulatory region 441334	446 bp distal
Rr441335	regulatory region 441335	128 bp distal
Rr441336	regulatory region 441336	906 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	655 bp downstream
Tssr96459	transcription start site region 96459	619 bp downstream
Tssr96460	transcription start site region 96460	592 bp downstream
Tssr96461	transcription start site region 96461	479 bp downstream
Tssr99967	transcription start site region 99967	760 bp upstream