rs248667187 SNP Detail

Summary

• ID
  rs248667187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATGTTG CTCTAATGAT
  TCCCTATGGA ACCCATTCCT CAAGACATTT CTCTCTTGAT TGGCGCAGCT CAACAGAAGC
  TAACAGGCTT CTGAGGCTAT GTGTCAGGGA CCCAGAGCTG TCTCCAGCAA GGCGAGGCAG
  AAGGAACACT TGGGATACAC AGATCGAGAT ATTACCTGTC AGGGCTCTGC TCCTCACCCG
  W
  GTAGAATGTT GTCCCTTCCC GCCACTGTGC AGCCCTGCAG GAACAGGTCC TGGTTAGACT
  GCCAAGCTCC CGGGGAGAGG TCATCCCTTT GTCTTTCGCG CTCACAGGCC CACACCTCCT
  TACCACCTGA CTCAATGTGT TTGCACAGAG TGTGGAAGAT GCACACGTGA GGGAGAGTTG
  CAAAGACAGT GGCTGGCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135624	CHEV_9_99260529	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248667187					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1405 bp distal
Esyt3	extended synaptotagmin-like protein 3	1553 bp upstream
Tssr91051	transcription start site region 91051	1558 bp upstream