rs248670627 SNP Detail

Summary

• ID
  rs248670627
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137048072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGTGATT TCCTTGCCCA
  CAGTGGTAAA TGTACTATTG AGAGAAAGAC GTGAGTGATT CTAGTATTAG ACAGATTTAA
  TAAGTATGAA AGCTAAAATG CACGCTACCC AAAGAAGCAT TTGGGAAAGA TTTGCTCTGA
  CTCTAGGGGA CGGGCGGCGT GCACTGTGAG AGGGTATGTG TTTGTGTGTG TGTGTGTGTG
  T
  GGGGGGGGGG GGAAGTAATC CAGAAAACTC AGTTCTAATT TTATTTGCCT GTCTCTTTTT
  CCAAAATTTA CTGCCTAAAA GATTTTAATT TATAAAAACA ATCAAACGTA GAAAATAATA
  AAAATCACTG GTCCAACTTG AGTTTACATT TTGCCAGTAA TTTTTAAAAA TACTGTTATA
  AACTGAGGAT AAGTCTGAAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SPRET/EiJ	ST/bJ
ss359882673	MGP_WTSI_3_137005275	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SPRET/EiJ	ST/bJ
rs248670627					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359882673	MGP_WTSI_3_137005275	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137048072 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	Intron
Rr585936	regulatory region 585936	1158 bp distal
Tssr31897	transcription start site region 31897	1265 bp downstream
Tssr31898	transcription start site region 31898	1216 bp downstream
Tssr31899	transcription start site region 31899	1165 bp downstream
Tssr31900	transcription start site region 31900	1157 bp downstream
Tssr31901	transcription start site region 31901	1121 bp downstream
Tssr31902	transcription start site region 31902	1088 bp downstream