rs248676409 SNP Detail

Summary

• ID
  rs248676409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106763333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACACTGT GGTCCAGGTT
  GCCGATGAAG AGGTTTCGAG TGGCTCTCTG ATCATCCTCC GGCATCAGGT CCTCCTCGCA
  CACGGCCTGG TAGCCGTACG GGCGGCCGCG GTCGTCGTAC AGCCCGTAAT AGTCCAGGGC
  TCGCTCTCGA GACAGTCCCA CGGCCGCCGC GGCAGCAGCA TCCAGGGCGA AGGCTGCGGC
  R
  GCGTGCCGCG CGCGGGGCTC CCGCAGGGGC GGGGCGGCTA CCGGAGACAG CGAGCGCTGC
  TTGTACTGGT AGCCACCGTG CAGGGGCAGA TAGCCCAGGG GGTCGGCGGG CGCGGGAGGC
  CCGGGGGGCG GCGTGGAGGC GGCGGCGCTG CTGCTGCTAC TGCGCCGGCT GCTCCCGCCG
  CCGCGCAGGT ACACCGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838597	MGP_WTSI_9_106788465	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248676409					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838597	MGP_WTSI_9_106788465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106763333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	within coordinates
Rbm15b	RNA binding motif protein 15B	within coordinates
Rr401656	regulatory region 401656	1044 bp upstream
Rr686406	regulatory region 686406	1136 bp proximal
Rr686407	regulatory region 686407	1284 bp proximal
Rr686408	regulatory region 686408	1881 bp proximal
Tssr86941	transcription start site region 86941	287 bp upstream
Tssr91351	transcription start site region 91351	925 bp downstream
Tssr91352	transcription start site region 91352	969 bp downstream