rs248678268 SNP Detail

Summary

• ID
  rs248678268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTAGAC CAGGAGTGAG
  ATGATCTTGG GCAGAGGGCA GAAGAACATG GTATCCAAGA GATTCTGAGG CCTTGTCTAT
  AAAGTCTGAG CGCCACTGGT CTTTCTTTTT AAAGTTCTCT TTCAACCTTA TAGTGAGGAA
  ATTCATCTTT CTTAAAACTT GTCTGTATTT ATTTATCCAT TAGCATAACT TTAGAGTATA
  Y
  GGATTCAACC TGACTTTATT ATTATTTAGC ATATTCTTTA ATGTAGAGAT GGTAGATTTT
  TTTTTTTTTA TTTAGGAAAT CGGCTAGCTT TTCGTTAATT TATTTACATT TTCTTTTTTT
  TTTATTTGCA TGAGGTGGCT AGTTAACTTT ATACAGTATA GATATTTTAA TGCTCTTCTT
  GCTCTAATGT AATGGGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355230934	MGP_WTSI_2_109756677	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248678268					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355230934	MGP_WTSI_2_109756677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	948 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1127 bp upstream
Rr397176	regulatory region 397176	838 bp upstream
Rr562509	regulatory region 562509	637 bp proximal
Rr562510	regulatory region 562510	1138 bp proximal
Rr562511	regulatory region 562511	1243 bp proximal
Rr562512	regulatory region 562512	1282 bp proximal
Rr562513	regulatory region 562513	1670 bp proximal
Tssr19307	transcription start site region 19307	1051 bp upstream
Tssr19308	transcription start site region 19308	1076 bp upstream
Tssr19309	transcription start site region 19309	1119 bp upstream
Tssr19310	transcription start site region 19310	1159 bp upstream
Tssr19311	transcription start site region 19311	1203 bp upstream