rs248678320 SNP Detail

Summary

• ID
  rs248678320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190802431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTAAATCC CTACACAGTA TTTTACCACA GTAGAGAGTT
  AGTTTACTTA CCTTTCATAT AGTGCAGGCT GGTCTTGAAC ACCTGATCTT CCTTCTCTCA
  Y
  TGGCTGGGGT CAGTCACCAT ACCTATCACA TATCAGTCTT CTCAGAATTA TTGAAACTGG
  AGTAAATGCA AATGAGCCCT GAATCATAAT GCCAATGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194684	CHEV_1_192894113	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248678320					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190802431 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426039	regulatory region 426039	1582 bp distal
Rr426040	regulatory region 426040	1322 bp proximal
Tssr10723	transcription start site region 10723	1035 bp downstream