rs248687906 SNP Detail

Summary

• ID
  rs248687906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77106431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCAAATT TATGGGGGAA
  AGAAAAAAAG CTCAATGATC AAAAGATCTT TGTTTAGTGG AGATCTTCAC AGTAGGAAGC
  AATTGAGAGG TTTTAAAAAA AAAATAGCAG GTTGGAGCTT TCCAACTCAG GGTCCAGCTC
  TCTGTGCCCG CCCCTTCCCT CAGCATCTCA GGTACAGTGA CTGACTTTAG GCAGGTTGTA
  S
  AGGAAGGAAG CCTGAGGCTA CTACGAAGTT TCCAGTGTTT ACCACCGGGG GGAAAAATCT
  TTCTTAGGAA AAGTCTGGTC GTTAACCCTG AGGCCCTTTA TGATGAGGAG GGTGGGGAAG
  CTCATTAAGA CGGAGCCCTC TTGAGGGCCA GGTCCAAGCA GGAGGGCTGG TCTCCCGGGT
  CTAGCCCAGA GAAAGCGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383936475	MGP_WTSI_11_77029107	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248687906					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383936475	MGP_WTSI_11_77029107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77106431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3303	CpG island 3303	88 bp proximal
Gm45027	predicted gene 45027	within coordinates
Rr402749	regulatory region 402749	1107 bp downstream
Rr402750	regulatory region 402750	560 bp downstream
Rr451639	regulatory region 451639	809 bp distal
Rr451640	regulatory region 451640	697 bp distal
Rr451641	regulatory region 451641	192 bp proximal
Rr451642	regulatory region 451642	571 bp proximal
Rr451643	regulatory region 451643	974 bp proximal
Ssh2	slingshot protein phosphatase 2	682 bp upstream
Tssr103125	transcription start site region 103125	566 bp upstream
Tssr103126	transcription start site region 103126	575 bp upstream