rs248690412 SNP Detail

Summary

• ID
  rs248690412
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:143202960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAAAGAG ACAAGAAGCG
  ATCTCGGGAC GAACTTAGCA GAGACCCGAA AGGCCCAGGA AAGGCATAGC CAGGCCTTCC
  ACACAGATCC TTTTGTAGTA GTTAGTACTA CACCCCAAGA CCAGCCGGGC CGGACCCACC
  CAAGGCGCAC AGTCGCGCGG GCCACTGCAG TCCGCAATGG CACTTTCCGG AGTCGCCTTC
  S
  GATGGACCGC TTTCTGATGA GAAAGGGAGG AGAGGCGTGT CCACCTTGTC CCGGAGCTCA
  GGGACCAACC GGACACACTT TCTCTGGCTA CCCGCTTGGC CATTCCCCTG CCTCTGCTTC
  ACCTCCTCAA TCCCCCAACT CTGGACCACT TAAGAGCAGA CGAAGTTCTG AAGTGTTGGT
  TGGCGATGCC CAGGCTGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322477203	CHEV_7_150835128	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248690412					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143202960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
E230032D23Rik	RIKEN cDNA E230032D23 gene			within coordinates
Rr658477	regulatory region 658477			419 bp proximal
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22			Intron
				Noncoding-Transcript-Variant
Tssr75968	transcription start site region 75968			373 bp downstream
Tssr75969	transcription start site region 75969			391 bp downstream