rs248697244 SNP Detail

Summary

• ID
  rs248697244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20664878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTGGT TACCCCATCT
  TCCTTAATAG GGTTTCTCAG GGGCAGGAGA TGGCAGACAG CATGGTGTCT GCGTCGCTCT
  GCTCCAGCCT CTGGGCTTAT GTCACCTCAT AGAGCAGACA GGCTAGGAGC TTGACTCAAG
  TCTCAGGGCT CAGAGGCCCT AAATCCCCCC CCCATCCCCC CCCCCCTCCC GCGAGCAGCT
  Y
  GGGTTTTACC AGATGCAGCC ACGCCTCTGC ACCCGCAGCT CCTGCTTAAG CCCACAGAGC
  CCACCTGGGG GCACCATCGT CAAGAGCTCT GACACTGGGG TCACGAATAA GGAGGGGTTT
  TATGCCGGAC AGGACTAGCA TCTGGGCAGT CACCGAACTT GTGTAGTTGC CGGGTGGGGG
  GTTCGGGGGG AGCAGAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403203705	MGP_WTSI_X_20375765	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248697244					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403203705	MGP_WTSI_X_20375765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20664878 () rs orientation: forward

Symbol	Name	Function Class
Araf	Araf proto-oncogene, serine/threonine kinase	within coordinates
Gm26065	predicted gene, 26065	1693 bp downstream
Rr8515	regulatory region 8515	within coordinates
Rr9663	regulatory region 9663	1323 bp proximal
Tssr160680	transcription start site region 160680	855 bp downstream
Tssr160681	transcription start site region 160681	815 bp downstream
Tssr160682	transcription start site region 160682	225 bp downstream