rs248701329 SNP Detail

Summary

• ID
  rs248701329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7555340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCCCGC GGTCTGACCG
  CAGTGAGTAC CACTCTAGCC TGCCAGCCAA GGCTGCCTGG GACCCGTCGT GCCTTCGTCG
  GAGGTGGCGT CCGCCCTGGC TCTGCTCCCA CTCCATTCTC AGACCCGGAG AGAAAGTGTG
  CAAATACCAA CGCCTCTCTT TGTCTGCCAC CTGCAGAGTC TTCAGGCTTG AGAGTGTGGG
  Y
  CAGTGGGTAG GGGGCTGGGA CGCTGAGACT CAAGGAGAGG AGGATTTGAG GCTCTTTGGC
  GCCTCAGGAG CCTTCTTAAA GGGTTTGGAG AAGTGTTCGA CCTGGTGGGC TTTTGGTTTT
  GTTTTTATTT TAATCTTGGT TTAGCGGGAC CTGTTCTTTC TTCCTTGTGG CACTGAAATT
  CAGCTGCTCT AACTCTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321734093	CHEV_6_7505340	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248701329					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7555340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	within coordinates
Rr146475	regulatory region 146475	within coordinates
Tac1	tachykinin 1	within coordinates
Tssr54885	transcription start site region 54885	273 bp downstream