rs248707729 SNP Detail

Summary

• ID
  rs248707729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACTTAGC CACCTAATGT
  CCTGCCTCGT CCCACCTGCT GCAAGCGGCC AATCCGGGGT CCCAGCTCGG CGAAGCTTCC
  TCCATAGCGA AGGGCCCTAT GGTAGCAGCA TACGGCTTCC TCACTGTCGT GCTCTGATTC
  ATACAACTGT CCAAGCTGTT CCCACAACCC TGGCTGCGCT GGCTCCCGGA GCAATGCCTG
  R
  ACACAGCCAT GTAGGGATTC CAACTTCCCG TGAAGGGGTC TTGGGGTGGG TGTCCTACAG
  AGTGGAAGGA ATTGGGGATC ATCAGGCTTG GGGAAACCTT TAAGGCCCCA ATTTCCCTCC
  AATCCTAGAA CTTTGGAATC CCCCACTTAC CCAGGAGCAT AATAGGGTTT GTTAGGGTGC
  CCGGAGCTAC TGCCATGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783440	MGP_WTSI_11_69221092	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248707729					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783440	MGP_WTSI_11_69221092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	929 bp proximal
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	384 bp proximal
Rr402670	regulatory region 402670	1005 bp upstream
Rr402671	regulatory region 402671	1769 bp upstream
Tssr3543	transcription start site region 3543	1090 bp downstream
Tssr102455	transcription start site region 102455	712 bp downstream
Tssr102456	transcription start site region 102456	1321 bp upstream
Tssr102457	transcription start site region 102457	1691 bp upstream
Tssr108660	transcription start site region 108660	1679 bp upstream
Tssr108661	transcription start site region 108661	820 bp upstream
Tssr108662	transcription start site region 108662	16 bp downstream
Tssr108663	transcription start site region 108663	47 bp downstream
Tssr108664	transcription start site region 108664	223 bp downstream
Tssr108665	transcription start site region 108665	968 bp downstream
Tssr108666	transcription start site region 108666	1556 bp downstream
Tssr108667	transcription start site region 108667	1802 bp downstream
Tssr108668	transcription start site region 108668	1823 bp downstream
Tssr108669	transcription start site region 108669	1838 bp downstream
Tssr108670	transcription start site region 108670	1957 bp downstream