rs248709749 SNP Detail

Summary

• ID
  rs248709749
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTTATC TCAGTGTCAT
  ATATTGTTCA GCATATAGAC TACAGCAAGC AAGCCTTCGG AGCTGTTTCC AACAGAGGCA
  CAATCTCATA TGCGTACACT GACCGTCCTG AAGAACACCC AAAACACTAT GCTTATATTT
  GAAAAATGCA CAAGGTAAGT GCTATTCCAA AAATAGTTGC CCCAGCAAAC TCTATTGCTT
  W
  AAACTTGCAA TTAAGTTTAC TGACAGAAAG CCCAGTGTAC AGAATTACAT ACTATAGGAA
  CAGCAGAACA AACAGGAGAA GAAGAGAAAA ACTAGGTCAG AGGTCAGAAA ACACACCTAC
  AGGCATGGTA CGCGGTAGTC AGCGTTCCTC AGAGTCTGAG GTTGTTGCAC GGACAGTGGA
  CACACAGAAA TCCTGGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458389	CHEV_10_109339799	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248709749					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738604 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	996 bp proximal
Tssr99236	transcription start site region 99236	1071 bp downstream
Tssr99237	transcription start site region 99237	1087 bp downstream
Tssr99238	transcription start site region 99238	1109 bp downstream
Tssr99239	transcription start site region 99239	1132 bp downstream
Tssr99240	transcription start site region 99240	1168 bp downstream
Tssr99241	transcription start site region 99241	1209 bp downstream
Tssr99242	transcription start site region 99242	1269 bp downstream