rs248711997 SNP Detail

Summary

• ID
  rs248711997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131804865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTGCT CATTTTTTTT
  TATATCATTA AATTCTTCCA GTCAGAAATG CTTGACGCTC AGAGAGCTGA TGTGACAACC
  ACACAGTTCT GAAATAACTT CGAGGGTGAC AGGCAGGGCA CAGCTTTCTT CCTCTGGAGG
  CTGAAGGCTC AGTTTGCTGG GGCCTGTGGG CAACTGATAA ACTGGGGGGG GGGGGGGGGG
  R
  AGGGACTTGT TTGTGTCAGC CTCCCTCCCC TTCTGAGAAT GCCTGAGCCT CCTTATCCTG
  TCAGAGCCTG GGTGCTGTCC CCAGCTTCAA GTGGGCGTGA GCTGAGCGAT AAAGCGCCCA
  GGGAATAGAT GGGGTGTGGG GGGGTGACAC GTGGGCGTAC ATATGTGGGA ACATCTGTTT
  CTTCAACTGA ACTTTATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321330387	CHEV_4_131633469	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248711997					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131804865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	1990 bp distal
Gm10300	predicted gene 10300	562 bp downstream
Rr1070	regulatory region 1070	within coordinates
Rr600866	regulatory region 600866	1743 bp distal
Rr600867	regulatory region 600867	within coordinates
Rr600868	regulatory region 600868	1879 bp proximal
Tssr39361	transcription start site region 39361	1945 bp downstream
Tssr43636	transcription start site region 43636	942 bp downstream