rs248715422 SNP Detail

Summary

• ID
  rs248715422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78230698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGGGCA TGGGAGACAC
  TAGCTTCCTC CCTTAGCCTG CAGCTTGTGC CTCCCATCTA ATGCTGCTTC TCCTTGTTGA
  CCAAGTGATG CCCACGCTGT GGATAGTCCT CATCCTGGTC TTTCTCATCC TCACCTTGCT
  CCTGATCCTT CGCTTTGGCT GTGTCTCTGT ATACAGGTAA GTGCACTCTG TGCGCAGAGG
  R
  AAGTGGAAAC TGGGCTCCGG GGTCACAGAG ATGACACAGC TGGATACACT CTCGTTCCCA
  GCCTACCATT CACTCCCCTG GTTTCAGTTT TCTCTCTATA CGTGGGCACA GAAGTAGCTG
  GCACAGAGGT CTATGGAATC TCACATACAC GTGTCCCCAC CCTCCTGCTG TCTTCCAGGA
  CGTACAGGAA GTGGAAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss394652008	MGP_WTSI_15_78176928	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs248715422					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394652008	MGP_WTSI_15_78176928	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78230698 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Rr505249	regulatory region 505249	1890 bp proximal
Tssr131930	transcription start site region 131930	1587 bp downstream
Tssr131931	transcription start site region 131931	1003 bp downstream
Tssr131932	transcription start site region 131932	1569 bp upstream
Tssr131933	transcription start site region 131933	1653 bp upstream
Tssr131934	transcription start site region 131934	1717 bp upstream
Tssr131935	transcription start site region 131935	1782 bp upstream