rs248715873 SNP Detail

Summary

• ID
  rs248715873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98307222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCAAAA ATGCCTGTGG
  ACTTCAACGG GTACTGGAAG ATGCTGAGCA ATGAGAATTT CGAGGAGTAC CTGCGCGCGC
  TCGGTAAGCG CGGCCCGCGG TTTGCAACCC CCGGCTCCCC GCAGACCCCA GTACCCCATC
  CCAGAGCGCG GCCGCCGGCT GCCAACCAGA GGGCCCGAGA TGTTAGGGTT AATTGGTGGC
  R
  AGTGTCCGAT AGCTCTCCCC GGAGGTAGAT AGTTCAATCA CTAGGGCAGG GCAAGCTTTG
  CTAGTTTGTT TTTAAAGGTC GGGGGCGGGG GGGGGGGCAA CAAAACTTTG TTTTCAAAAG
  AATAAAAATG GAAAGGCAAG GCACAGACGG CCCTCAGAGG CCACGCAGAG TGAGCTGGAA
  TCCCAACCTT GTTCCACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129384	CHEV_9_98325588	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248715873					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98307222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	within coordinates
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	1575 bp distal
Rbp1	retinol binding protein 1, cellular	Intron
Tssr2984	transcription start site region 2984	65 bp downstream
Tssr86646	transcription start site region 86646	337 bp downstream
Tssr86647	transcription start site region 86647	264 bp downstream
Tssr86648	transcription start site region 86648	234 bp downstream
Tssr86649	transcription start site region 86649	199 bp downstream
Tssr86650	transcription start site region 86650	137 bp upstream
Tssr86651	transcription start site region 86651	319 bp upstream