AAAGCTGTCT GTGGGGCCTT AGGGTTAAGG CTCAAGGCTA AGGCTCAAGG CTCATGGCTC AGACAGGGCT CCCTGCCTGG CTCTTCCCAT CTCCTTCACT TTTCCATTGT CGTTTACCTG CCCTCCACCT AAGGAGGCGG CAGCTTGAGA TGACCTGATG TCCTTTTTGT CCCCACTCCT GGCAGATGTG GATGCCATCC Y CCTGGAAACG AAGTTTTTGT TAGACTGAGA AGCCAACCCA CACCCCCTCA GATTCCGCCT CACTCCACTC CCGGGGCCCC AGATTTATTT AGTCCATAAC TATAGCTCAA ACATCCTACT GACTCAGTTC TGTCCTTGAA AAAATTGGTT GTTTTGCCTA CTAAGTTGAA GGGAGGGGCT CTCAGAACAA CTCCCTTCCC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss373078361 | MGP_WTSI_7_134118904 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs248718834 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss373078361 | MGP_WTSI_7_134118904 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr7:126574562 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cdipt | CDP-diacylglycerol--inositol 3-phosphatidyltransferase | 1068 bp upstream | ||||||
Cdiptos | CDIP transferase, opposite strand | Coding-NonSynonymous | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Splice-Site | ||||||||
Splice-Site | ||||||||
Cpgi19724 | CpG island 19724 | 400 bp proximal | ||||||
Gm73941 | predicted gene, 73941 | 352 bp downstream | ||||||
Rr368439 | regulatory region 368439 | 576 bp upstream | ||||||
Rr655656 | regulatory region 655656 | 25 bp proximal | ||||||
Rr655657 | regulatory region 655657 | 388 bp proximal | ||||||
Tssr2401 | transcription start site region 2401 | 1190 bp upstream | ||||||
Tssr69140 | transcription start site region 69140 | 1021 bp downstream | ||||||
Tssr69141 | transcription start site region 69141 | 225 bp upstream | ||||||
Tssr69142 | transcription start site region 69142 | 889 bp upstream | ||||||
Tssr69143 | transcription start site region 69143 | 948 bp upstream | ||||||
Tssr69144 | transcription start site region 69144 | 1017 bp upstream | ||||||
Tssr69145 | transcription start site region 69145 | 1042 bp upstream | ||||||
Tssr69146 | transcription start site region 69146 | 1134 bp upstream | ||||||
Tssr69147 | transcription start site region 69147 | 1157 bp upstream | ||||||
Tssr69148 | transcription start site region 69148 | 1220 bp upstream | ||||||
Tssr74865 | transcription start site region 74865 | 10 bp downstream | ||||||
Tssr74866 | transcription start site region 74866 | 397 bp downstream | ||||||
Tssr74867 | transcription start site region 74867 | 454 bp downstream | ||||||
Tssr74868 | transcription start site region 74868 | 702 bp downstream | ||||||
Tssr74869 | transcription start site region 74869 | 734 bp downstream | ||||||
Tssr74870 | transcription start site region 74870 | 742 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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