rs248721090 SNP Detail

Summary

• ID
  rs248721090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117111905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTCTC TGCATCCCTT
  CATCCGCACT TGACTATCTC CCAGAGTTCC ACTCTCCTCC CGGAAGTCCC ACCTTCTACT
  TCCTGCCTAC CTATAGGCTG TTCAGCTCTT TATCAGACCA ATCAGAAGGC GGTGGACAAG
  ATATTTTCAA AACGCTAAGA CAGGTGGTGC TTAACAATAT CAAAGACTGG ACTGTAATCA
  R
  ATCTCTTCTG GTACCGAAAT CAGCATTTGA ATATTGTAGC GACAATCTTA ACTCAGTGCA
  CCAAAACATC ACAGCCACAC AACTCTGTGT GTTTATGGGC ACAAGGTCAT GTGTACTGTG
  GTGCTCATGG AAGTCAGAGG AAAACTTGCT GGAGTGCATT TCCTCCTTGC ATCTTGTGCA
  CTCCCGGTTT GTACTCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323495151	CHEV_10_116713056	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248721090					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117111905 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	1541 bp downstream
Rr439488	regulatory region 439488	102 bp distal
Tssr95904	transcription start site region 95904	1329 bp upstream
Tssr95905	transcription start site region 95905	1385 bp upstream
Tssr95906	transcription start site region 95906	1447 bp upstream
Tssr95907	transcription start site region 95907	1464 bp upstream
Tssr95908	transcription start site region 95908	1640 bp upstream
Tssr95909	transcription start site region 95909	1716 bp upstream
Tssr95910	transcription start site region 95910	1851 bp upstream
Tssr95911	transcription start site region 95911	1981 bp upstream
Tssr99410	transcription start site region 99410	1430 bp downstream
Tssr99411	transcription start site region 99411	1482 bp downstream
Tssr99412	transcription start site region 99412	1603 bp downstream
Tssr99413	transcription start site region 99413	1664 bp downstream
Tssr99414	transcription start site region 99414	1753 bp downstream
Tssr99415	transcription start site region 99415	1836 bp downstream
Tssr99416	transcription start site region 99416	1886 bp downstream
Tssr99417	transcription start site region 99417	1998 bp downstream