rs248725688 SNP Detail

Summary

• ID
  rs248725688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttccactt ctctgactac ccccccatcc
  tctacctgag gaaggtaatg gggtccttgg caaacctaca aattcctctc cctacacccc
  ataagaacct gcccagcaaa tacctgggat tcctggagag cttttccaca caaaagaggc
  R
  ttcccagttc actgagctcc agccagtcat caacattcac cctgaaaact cctctccact
  ctccaaagtt catatacagc ccttgtccac ccaaataaag taagtgagca ccagctattt
  cactgaagac catctaagag ccacttcatt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923452	CHEV_15_36655551	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248725688					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726040 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	446 bp upstream
Cpgi7034	CpG island 7034	1540 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	560 bp downstream
Tssr131078	transcription start site region 131078	519 bp downstream
Tssr131079	transcription start site region 131079	524 bp upstream
Tssr131080	transcription start site region 131080	565 bp upstream
Tssr131081	transcription start site region 131081	596 bp upstream
Tssr131082	transcription start site region 131082	871 bp upstream
Tssr131083	transcription start site region 131083	1064 bp upstream
Tssr131084	transcription start site region 131084	1110 bp upstream