rs248728329 SNP Detail

Summary

• ID
  rs248728329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12274741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTGCTA GTGGAAGACT
  GACTTCCAGG CAACTAGGGT GAGGATCTTA TACCCACACC CACAGTGACA CACCCATTCC
  AAGCAGGTCA CACCTATTCC AAGAAGGCCA CACCTTCAGA TGGTGCCACT CCCTGGTCCA
  AGTTATACAA ACCATCACAC CACCCATGAA GAAGTTTCCC TTGAGCTGAG TTACAGGGAC
  R
  TTTGCTCCCT GCATGACTGC GAGCTGAGCA GTGTTGGGAG GGCATCCAGG AGGTGGAGGA
  GGAATGTTGC CAGCGGTGGC ACCAGCTCCA AATCTGGCAC CTGCATCATG CCCTCCTTCC
  ACCAACACTG CTGAGCCAGG TGAATAGTTG GGACCAACTG CATAATAAGC CATGGGTATT
  GTGGAACCTA GAGGCCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss387753850	MGP_WTSI_13_12352122	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs248728329					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387753850	MGP_WTSI_13_12352122	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12274741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5274	CpG island 5274	1517 bp distal
Gm47021	predicted gene, 47021	within coordinates
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	1742 bp upstream
Rr270765	regulatory region 270765	1660 bp proximal
Rr281008	regulatory region 281008	1340 bp distal
Rr387989	regulatory region 387989	within coordinates
Rr403567	regulatory region 403567	1524 bp downstream
Tssr121431	transcription start site region 121431	1793 bp upstream
Tssr121432	transcription start site region 121432	1721 bp upstream
Tssr121433	transcription start site region 121433	1670 bp upstream
Tssr121434	transcription start site region 121434	308 bp downstream