rs248735479 SNP Detail

Summary

• ID
  rs248735479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58663403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCTTCA GTAATTGCCT
  TGTGGGCCCT GATCCAAATC CTTGCCTCGC CATCTCCAAA TATGACCTCA TGTGTCCTTC
  CTGGGTTTCT CTCTCAGCAG TGGGAGGACA CACAGGATTC TAAGCCTAGT TGAACTAATT
  TCTGTTTCTT CTTAATGGTG TGGGGGATGC TCTGAAGGGG GTAGGGAACA CGTCTCCTTA
  R
  AAACCAAGGT CTGGAGGCAC CCTTGACCAT CTGGCATTTT GAATTACTTG GAAACATTTT
  AATGAAGCTT TCCTTCCAAC AGTCTGATCT GGGATACTCA CTTAACAATG TCCACCTGAT
  TGGCCACAGC CTGGGTTCCC ACATTGCTGG GGAGGCTGGA AAGAGGACCT TTGGAGCCAT
  TGGAAGGATC ACAGGTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923794	MGP_WTSI_19_58749461	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248735479					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923794	MGP_WTSI_19_58749461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58663403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	996 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	within coordinates
Rr365894	regulatory region 365894	1998 bp proximal
Tssr5571	transcription start site region 5571	1844 bp downstream
Tssr157266	transcription start site region 157266	1886 bp downstream
Tssr157267	transcription start site region 157267	1867 bp downstream
Tssr157268	transcription start site region 157268	1813 bp downstream
Tssr157269	transcription start site region 157269	1220 bp downstream
Tssr157270	transcription start site region 157270	1146 bp downstream
Tssr157271	transcription start site region 157271	85 bp upstream
Tssr157272	transcription start site region 157272	96 bp upstream
Tssr157273	transcription start site region 157273	1227 bp upstream
Tssr157274	transcription start site region 157274	1259 bp upstream
Tssr157275	transcription start site region 157275	1279 bp upstream
Tssr157276	transcription start site region 157276	1302 bp upstream
Tssr157277	transcription start site region 157277	1543 bp upstream
Tssr159959	transcription start site region 159959	1834 bp upstream
Tssr159960	transcription start site region 159960	1786 bp upstream
Tssr159961	transcription start site region 159961	177 bp downstream