rs248747299 SNP Detail

Summary

• ID
  rs248747299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTTAT GAATCACTGG
  ATTACCAACC CTGGAATGTT ACCATTCATC AAGGGCTGCG CTCTCCCTCA CTGGTCACTA
  AGTGAGAAAA ATGTCTTACG GCTGGATTGT ATAGTTGTTT TCTCAACTCA GGCTCCTTCC
  GCTCTGATAA CTTTGGTCTG ATAATTTCAT TTCAAGTTGA TATTAAATCA GCCAGTATAG
  W
  AGTAATGTGT GAGTGTTGGA TTTCTAGTTT GTAAATGTAT CACAGTAATG TAAGATTAGG
  GAACACTGGG TGAGGTAACA TCAGAACTTT TCCTACCCCT TGGCACTTTT CTGTAAAACA
  AATATTTTTT TTCTTTCAAA AAGCAAATCT TGCTGGGCAG TGATGGCGCA CACCTTTAAT
  TCTAGCACTC CGGAGGCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357150119	MGP_WTSI_3_19086099	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248747299					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357150119	MGP_WTSI_3_19086099	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1656 bp proximal
Mtfr1	mitochondrial fission regulator 1	1228 bp upstream
Rr397614	regulatory region 397614	1887 bp upstream
Rr573951	regulatory region 573951	740 bp proximal
Rr573952	regulatory region 573952	1521 bp proximal
Tssr28500	transcription start site region 28500	1203 bp upstream
Tssr28501	transcription start site region 28501	1222 bp upstream
Tssr28502	transcription start site region 28502	1260 bp upstream
Tssr28503	transcription start site region 28503	1267 bp upstream
Tssr28504	transcription start site region 28504	1986 bp upstream
Tssr28505	transcription start site region 28505	2000 bp upstream