rs248749601 SNP Detail

Summary

• ID
  rs248749601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19114254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATAAAA TAGTTAATTC AAAAAGAAAG AAAGGGGGCT
  GGAGAGATGG CTCAGTGGTT AAGAGCACCG ACTGCTCTTC TGAAGGTCCT GAGTTCAAAT
  Y
  CCAGCAACCA CATGGTGGCT CACAACCATC TGTAATGAGA TCTGACACCC TCGTCTGGTG
  CATCTGAAGA CAGCTACAGT GTACTTAGTA TAATAATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322117087	CHEV_7_19965678	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248749601					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19114254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1223 bp proximal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	1688 bp upstream
Gm26852	predicted gene, 26852	1891 bp downstream
Ppp1r13l	protein phosphatase 1, regulatory subunit 13 like	1796 bp downstream
Rr400148	regulatory region 400148	1459 bp upstream
Rr643124	regulatory region 643124	1191 bp proximal
Rr643125	regulatory region 643125	1668 bp proximal
Tssr64844	transcription start site region 64844	1676 bp upstream