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rs248753328 SNP Detail
Summary
  • ID
    rs248753328
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:126574083 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACTGGAATT AGAGGCCCCA
    GTTAAAGGAA CAACTTTCCC CATGTTTAGA AGAGTTGTGG CTAGAGCAGG TAGGGACAAG
    GGGGTTCCTG GGTAGTGACA ATGAATGAGT TAGAAGTTAA GGGGCACTGT GCCTAGGATG
    GGCAAGGAGG CAGAAGATTC CTGGGGAGAG CAGCTATGGT TGGGAGTGAG TCAGGGACTG
    S
    TCTCTAGATG AAGAAGGAGA GCGTTCACCA TGTCTAGATA TCTGAGTCCC TTGGTCTTTT
    GTGTTCTTTT CCTTATTGGG CAGAGGACTC AAACGGGAGC GAGCAATAAA CAGTGCTTCG
    TCTGTAAGTT CTGTGCTGAT TCGGGTCAGG AATTCTTCAG AGCAGGATAA TTTCTGAAAA
    GGAAGTTAGA ATTCAGTCTG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373078355 MGP_WTSI_7_134118425 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248753328 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss373078355 MGP_WTSI_7_134118425 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:126574083 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cdipt CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1547 bp upstream
Cdiptos CDIP transferase, opposite strand Intron
Noncoding-Transcript-Variant
Cpgi19724 CpG island 19724 879 bp proximal
Gm73941 predicted gene, 73941 within coordinates
Rr368439 regulatory region 368439 1055 bp upstream
Rr655656 regulatory region 655656 504 bp proximal
Rr655657 regulatory region 655657 867 bp proximal
Tssr2401 transcription start site region 2401 1669 bp upstream
Tssr69140 transcription start site region 69140 542 bp downstream
Tssr69141 transcription start site region 69141 704 bp upstream
Tssr69142 transcription start site region 69142 1368 bp upstream
Tssr69143 transcription start site region 69143 1427 bp upstream
Tssr69144 transcription start site region 69144 1496 bp upstream
Tssr69145 transcription start site region 69145 1521 bp upstream
Tssr69146 transcription start site region 69146 1613 bp upstream
Tssr69147 transcription start site region 69147 1636 bp upstream
Tssr69148 transcription start site region 69148 1699 bp upstream
Tssr74865 transcription start site region 74865 489 bp downstream
Tssr74866 transcription start site region 74866 876 bp downstream
Tssr74867 transcription start site region 74867 933 bp downstream
Tssr74868 transcription start site region 74868 1181 bp downstream
Tssr74869 transcription start site region 74869 1213 bp downstream
Tssr74870 transcription start site region 74870 1221 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory