rs248755948 SNP Detail

Summary

• ID
  rs248755948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAACTGA AGTCCTTTAG TCTTATTCTC CTGCCTCAGC
  TGTTCTCTCA ACTGTCCTCT GCGTATCAAC ACCAGGTTCT CCTAAGTAGA TACTGGCTAA
  S
  AAGGAAGCAG CAGCTACAGG CTTTAGGCTC CAAACCCTTC CACCCTGCAT CTCTTGTCCC
  TTGTGGTCTT TAGTCTCCTG GCTTCAACAT TCTTCCTGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323727814	CHEV_11_68970063	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248755948					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047387 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	511 bp upstream
Cpgi3111	CpG island 3111	378 bp proximal
Rr449891	regulatory region 449891	181 bp proximal
Rr449892	regulatory region 449892	439 bp proximal
Rr449893	regulatory region 449893	1548 bp proximal
Tssr102419	transcription start site region 102419	327 bp upstream
Tssr102420	transcription start site region 102420	352 bp upstream
Tssr102421	transcription start site region 102421	471 bp upstream
Tssr102422	transcription start site region 102422	492 bp upstream
Tssr102423	transcription start site region 102423	502 bp upstream
Tssr102424	transcription start site region 102424	523 bp upstream