rs248757450 SNP Detail

Summary

• ID
  rs248757450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129228779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTCGG CCGCGGCGGG
  CCGGAAGTCC TGGGGCCACC CCAGCCGGAC ACTCCGTTAC TCCTTCGGGG GCCGATGGTG
  TCCAACCCCG AACGAAGCAC GGTGGCGCGC GCCAAGTCCG CCAAACCCGG GGAGGAGACC
  TGCGCATCGA GCCTGGGGAT GGAGAGCGGC GCCCCGAGTC TCGGCAGGCA GAGGGACCGG
  Y
  AGGGAGCCTC GTAGTCGCCT AGGCCGGAGA CCTGGCGTCG CCTCGCATCC GCTCCGGAGG
  AGCTGCTGCG CCGTTAGCCC GCCCCGCCGG GGAGCTCAGT CCTCAGGCCG GCGTCGCTGG
  GACGAGGCTC GCCAGAGTCG GGCCTGCTCT CCGTCTCAGG CCGCGTAACA GGCCACGACA
  CAGCCCTACA AGCCAGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312039	CHEV_4_129012230	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248757450					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129228779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	within coordinates
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	373 bp upstream
Rr367702	regulatory region 367702	821 bp upstream
Rr600200	regulatory region 600200	335 bp proximal
Rr600201	regulatory region 600201	374 bp proximal
Rr600202	regulatory region 600202	1755 bp proximal
Tssr39141	transcription start site region 39141	607 bp upstream
Tssr39142	transcription start site region 39142	976 bp upstream
Tssr39143	transcription start site region 39143	1030 bp upstream
Tssr43492	transcription start site region 43492	257 bp downstream
Tssr43493	transcription start site region 43493	311 bp downstream
Tssr43494	transcription start site region 43494	338 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	546 bp upstream