rs248759606 SNP Detail

Summary

• ID
  rs248759606
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85696382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTCCG TCAGCACCAC
  CACCTTCACC ACCGCCAGGC GGATGTGGTT CTCAATGCTT GCATGACTGT ACAGCCTGTT
  GGCGATGGAG GCCAGGGTCA GCAGGTAATG CTGCAGGCCC CGCCCATACA TCCTGGCCAT
  GGACGAGTCA GCCACCAAGA GGAGCTCCAC CTGGCGGGCC CTGGAGATGG AACGGCGCCT
  M
  CGCCTCCACC AAGTCTGAGG TCCCGCGTTC CCAGATGGCG AGAAAGCTGA GTGGTCCAGC
  AGCTGCGGGG CCAGCGCTGA GCGTCTCCTA GATCTACTGT GCACCGAGGG GCTCTCTTGG
  GGCCCAGATG GGGATGCAGG AGTCTCGCAA CTGGCGCGTG GCGGCAGGGC CTCGAAGCTA
  AAGCCCTCGC GGTTGTAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397172048	MGP_WTSI_16_85899739	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248759606					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397172048	MGP_WTSI_16_85899739	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85696382 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	within coordinates
Cpgi8392	CpG island 8392	1137 bp proximal
Gm46558	predicted gene, 46558	17 bp upstream
Rr319329	regulatory region 319329	within coordinates
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	138 bp upstream
Tssr141914	transcription start site region 141914	736 bp downstream
Tssr141915	transcription start site region 141915	771 bp downstream
Tssr141916	transcription start site region 141916	800 bp downstream
Tssr141917	transcription start site region 141917	1109 bp downstream
Tssr141918	transcription start site region 141918	1187 bp downstream
Tssr141919	transcription start site region 141919	1225 bp downstream
Tssr141920	transcription start site region 141920	1562 bp downstream
Tssr141921	transcription start site region 141921	1624 bp downstream
Tssr141922	transcription start site region 141922	1853 bp downstream