rs248773232 SNP Detail

Summary

• ID
  rs248773232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106698101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTGGCTG CTGCTTTTCT
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTGCTTG
  CTTGCTTGCT TGCTTGCTTG CTTGCTTGCT TGCTTGCTTG CTTGCTTGCT TGCTTTTCTT
  TCTTTTCTTT CTTTGTCTCT TCTTCTTCCC CTTCCTCTTC CTGCTTTTTT TTTTTTTTTT
  Y
  CCAGAGGGAA ATCTCTGTAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGT
  CTTGAACTCA GAGATCCGCC TGCCTCTGTT TCCCAAGTGC TGGGATTAAA GGCATGCGCC
  ACTGCCACTA CCACTCTTCT GATACAGGCT TAGTAACAGC CGTAGAATCT GATCATGACA
  AGAGGTCCAC AGTGTCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323187383	CHEV_9_106723233	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248773232					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106698101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	663 bp proximal
Dcaf1	DDB1 and CUL4 associated factor 1	972 bp upstream
Rr368848	regulatory region 368848	705 bp upstream
Rr401655	regulatory region 401655	1544 bp upstream
Rr686399	regulatory region 686399	1395 bp distal
Rr686400	regulatory region 686400	1492 bp distal
Rr686401	regulatory region 686401	1030 bp distal
Rr686402	regulatory region 686402	482 bp proximal
Rr686403	regulatory region 686403	983 bp proximal
Tssr86935	transcription start site region 86935	992 bp upstream
Tssr86936	transcription start site region 86936	1097 bp upstream
Tssr86937	transcription start site region 86937	1121 bp upstream