rs248783854 SNP Detail

Summary

• ID
  rs248783854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCATAAC CTCCACTGAT
  CATTTCTTTC TCATAGCACA GTCAAATAGT AATAATAATT TACTGTGTAT CGAAGCACTT
  TCTAACCTAA TGTAGGATTT AGTCCTTTTC TCTCCCCCAA AGAGAATGCA ACCCTTTGCT
  ATTTAGTTCA CTTATATACC CTAGCATATA AGAGAGAGTC TGGTGCATAT TAAGCATTTA
  R
  ATTGTTGAAT GAATATGCCT CCCTAATGAT GCCTTATGAA GCCATCACAA ATAAAGCACT
  ATTGGTCAGG CATGATGATT CCTGCCTATA GTCCTAGCAT TCGGGAAGCA GAGGCAGGAA
  AGTTGAGGTA AGTTCCAGGC CAACCTAACC TATATGGCTA GGCGTGGAAT GCAAAGTAGA
  TCCTGAGTCC AAATTTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388627	CHEV_7_116077358	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248783854					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	422 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	910 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	571 bp upstream
Rr400539	regulatory region 400539	313 bp upstream
Rr652951	regulatory region 652951	1141 bp distal
Rr652952	regulatory region 652952	83 bp proximal
Rr652953	regulatory region 652953	303 bp proximal
Tssr68456	transcription start site region 68456	561 bp upstream
Tssr68457	transcription start site region 68457	673 bp upstream