rs248786611 SNP Detail

Summary

• ID
  rs248786611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6096373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTAACAG ACAGAATCAG
  CTCAGAACAA AGGGTCTGGC TATCTCCCAG GGATGAACAC GCACGCCGAC TGAGCTTTTG
  GGGTGTTGAA AAGTCAACGC CTTCGCACAG AACTCTCCAC CCCAACCTAG AAATAACTGG
  CGTTCTGTTT TATGTCAGTC CGGACACGCA AGCACTGCTC CTTTTGCGGG CCCCGTAAGC
  R
  TCCCCCCAGG CGGGATAGGG ATCCCCGGCC TATGGACTGC GCTTTCTCAG CTGGCATCCA
  GCTGCCTTGG CACCCAGTCC GGGGCCACTC TGCCTACAGA CCCTAGCAAC CACTCACCTG
  CTTTTCTTTC CCTATAGGCC AGAAATTTTT CCTTTCTTTT CTCATTGGTC CGCGTAACTT
  TATCGCAACC AATCGGCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668102	MGP_WTSI_19_6046343	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248786611					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668102	MGP_WTSI_19_6046343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6096373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	within coordinates
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1521 bp upstream
Gm59262	predicted gene, 59262	within coordinates
Rr370438	regulatory region 370438	within coordinates
Rr405816	regulatory region 405816	1862 bp downstream
Rr405817	regulatory region 405817	319 bp downstream
Rr543275	regulatory region 543275	1903 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	263 bp distal
Rr543279	regulatory region 543279	330 bp proximal
Rr543280	regulatory region 543280	669 bp proximal
Rr543281	regulatory region 543281	772 bp proximal
Rr543282	regulatory region 543282	965 bp proximal
Rr543283	regulatory region 543283	1028 bp proximal
Rr543284	regulatory region 543284	1076 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	233 bp upstream
Tssr154538	transcription start site region 154538	230 bp downstream
Tssr154539	transcription start site region 154539	286 bp upstream
Tssr154540	transcription start site region 154540	678 bp upstream
Tssr154541	transcription start site region 154541	712 bp upstream
Tssr154542	transcription start site region 154542	738 bp upstream
Tssr157816	transcription start site region 157816	1442 bp upstream
Tssr157817	transcription start site region 157817	605 bp downstream
Tssr157818	transcription start site region 157818	1067 bp downstream