rs248791600 SNP Detail

Summary

• ID
  rs248791600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105287701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACGTGC TGTGAGATGG
  ATGTCGGCCA GACCCTAAAG GACCAAGTTC TCTGACACCA GTTTCTCTTA GATAAAACCA
  TACACTTCTG TGGCTCACTC CTCCCCCCCA CCCCCCCAAA CACACGAAAT GACCTCTCTG
  AAGAAGGACT ATCTAGACAG ACAACTGCAT TCTTCTGGTC ACTAGGGGGA ACAAGGACTC
  R
  TGTCCTGACA ACCAAATCAA TTCAATGTAT GTATCTGGCA TTCTTGGAGT AGGGTAGGAG
  TGTTGTTGGT GTACGAGATA AGCGGGAATA GAAGCAAACA TGACATGTGC GATTGGCAGG
  ATCAAAGATG GTGAACACAG AAAAACAGAG AAGTTGGCTT ATATTTCTAG GTAGAATTCT
  AGCCAGTAAA AGAGTCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370110	CHEV_7_112787008	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248791600					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105287701 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	1590 bp proximal
Rr400513	regulatory region 400513	1754 bp upstream
Rr652793	regulatory region 652793	1072 bp proximal
Rr652794	regulatory region 652794	1573 bp proximal
Rr652795	regulatory region 652795	1812 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	1562 bp upstream
Tssr2358	transcription start site region 2358	1922 bp upstream
Tssr68382	transcription start site region 68382	1969 bp upstream
Tssr74083	transcription start site region 74083	1823 bp downstream