rs248798920 SNP Detail

Summary

• ID
  rs248798920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176719005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagagaaat tatttgcata gagatttctt
  tagagaaaat aaccaaatgg taaaaggtat atgaaaggac acttaccatt aactgtcaga
  gggatgtaac aaaactcatg tgagatacca cactacatcT CATAACCAAT TGGTAAAAGG
  Y
  ATATGAAAGG ACACTTACCA TTAACTGGCA GAGGGACATG GCCAAACTCA TGTGAGAATC
  CATACCACAT CTCATAAACA TAGCTCTAAT TTAAAAGACA ATAATAATAg gctggtgagg
  tggctcagta gtcagaaaca cttgtcatgc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320158159	CHEV_1_178821570	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248798920					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176719005 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	1209 bp downstream
Rr423928	regulatory region 423928	547 bp distal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates