rs248816898 SNP Detail

Summary

• ID
  rs248816898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106608013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCGGGGT GAGTCCCAGA
  TCTGGAAGAT GGTGGTGATT CATCCTAAGG ACATCTAGAT CTTTGGTCCG GGTTGGGGTG
  GGGGTGTCTC CCGCGTTATT TCAAGAGTGT GTTGAGCTGT TTCCTACCGT CATGGTGTCA
  CTTATCGTCC CCCTGTCTCT GAAAAGGTAC TGAGGCTACC AAGACCATCT AGATAGCACT
  Y
  TCCTTTCTTA GGCGAGCAGA CATTTATTTA TCACGGAACT ACGGTTGGTG AGCCGAAGCC
  AAGACGTGCT GCAGGCAGAC GCTGGTGGCC TGAGGGATCC AGGAAACCCT CTATAGCCAC
  GTGGCTCGCC CCCGCGGGTG GCGACGGGCC TGTCTAGGCT GCCGCCTCAG AGTCTTTAGA
  CAGTAGTAGT CTTTGGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321634537	CHEV_5_106889166	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248816898					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106608013 () rs orientation: forward

Symbol	Name	Function Class
Barhl2	BarH like homeobox 2	1981 bp upstream
Cpgi16165	CpG island 16165	503 bp distal
Cpgi16166	CpG island 16166	within coordinates
Gm33151	predicted gene, 33151	464 bp downstream
Rr107551	regulatory region 107551	1588 bp proximal
Rr123962	regulatory region 123962	within coordinates
Tssr47756	transcription start site region 47756	1446 bp downstream
Tssr52339	transcription start site region 52339	1729 bp upstream
Tssr52340	transcription start site region 52340	1677 bp upstream
Tssr52341	transcription start site region 52341	1651 bp upstream