rs248818187 SNP Detail

Summary

• ID
  rs248818187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127483250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAATCTGG CCTTGTGATC
  TGTTTTAGCA GTGACACATG GTTTAATAGA CACTGTGCAT CTTACCTAGT TGGCACAGTA
  AAATGTCCAT CTTTCTGTGT TTGGTTTTCT CCTTAGGAAA ATCATCTTCT AAAATGTCTG
  TTTTGTCCAC ACTTTTACAT GATAATTTTG CTGGTTATAA AATTCTAGGT TCAAGTTATT
  Y
  TGTCTTAGAT TTGTGTTAAT TCCAGTGCTT TCTGAAGTAT TTCTTCTTCT TTTTCCTTCT
  TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCTTCTTTTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCTTCTTCTT CTTCTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956105	CHEV_3_127392519	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248818187					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127483250 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	1049 bp upstream
Tssr35587	transcription start site region 35587	1147 bp downstream
Tssr35588	transcription start site region 35588	1690 bp downstream