rs248825558 SNP Detail

Summary

• ID
  rs248825558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80709827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAAAAA TCAGTCCCCA
  TAAAACAGGA GAAAGGAGGA CAGAAATATG CATAATCTTT TGCATTTCCA AGAAAAGTAG
  AGCATCCACA AAATATCCCC TCGTTTCCCT TTCCTCCTTT TCCTTCTTTG ACCGTTTTCC
  TCAGCAAATT AGATCCTCTG CATTTTGAGG TCGAAATTTA GCAAGGAGCT GCTAAAACCA
  Y
  GAAGTGAAGG CAGAAGAATC CTTATCTCCC AGGTTTAGCT GGTGGCTGTT GATGCCTGCG
  TCCTGTCCCT GCTCCTGAAG TCCGAGGACT GGCTGAATGC AGTTTTTAGC TGAGCTGCTG
  CTGTGGTCCC GGTGTCTGGG AATATCAGCA CCCTCCCGTG CACTCACACA ATCACCCTCT
  CTCGAGCTCT CTTCTCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358616719	MGP_WTSI_3_80606442	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248825558					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358616719	MGP_WTSI_3_80606442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80709827 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13280	CpG island 13280			1050 bp distal
Cpgi13281	CpG island 13281			within coordinates
Gm66511	predicted gene, 66511			within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)			mRNA-UTR
				Noncoding-Transcript-Variant
Rr578666	regulatory region 578666			305 bp proximal
Tssr29615	transcription start site region 29615			1988 bp downstream
Tssr29616	transcription start site region 29616			1965 bp downstream
Tssr33765	transcription start site region 33765			70 bp downstream
Tssr33766	transcription start site region 33766			84 bp downstream
Tssr33767	transcription start site region 33767			113 bp downstream
Tssr33768	transcription start site region 33768			131 bp downstream
Tssr33769	transcription start site region 33769			159 bp downstream
Tssr33770	transcription start site region 33770			225 bp downstream
Tssr33771	transcription start site region 33771			269 bp downstream