rs248830491 SNP Detail

Summary

• ID
  rs248830491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74702537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATTCTA GACAGTCAAT
  CACTACCACC AAATTAAAAG TCTCAGGCCT GGAAGGTTTT GTGGGACCAT GGGATTTTAA
  AACTTATTTT AAGTAAAACA TGAGCAAAAG TATTTAGTAA GTTCGTTTGC TCTTTTTCTC
  TTCTTACTTT CTTCTTTTGT TTTGTTTTGT TTTGTTTTTC TAGACAGAGT TTCTCTGTGT
  R
  GCCCTGACTG ACCTGGAACA TTCTCTGTAG ACCTCGAACT CAGAGATCCA GCTTCCTCTG
  CCTCCTGAAC GCTGGGATTA AAGCTCTGTG TTACCACCTA TGTAATCCCA GCAATAGTTT
  CTTGTTGTTT GTTTGTTTTT TGAGACAGAC TCTATGTAGT CCTGGCAGTT TCTTAGTCCA
  GCTTGAGAAT ACACACTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350128252	MGP_WTSI_1_74709952	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248830491					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350128252	MGP_WTSI_1_74709952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74702537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	1172 bp distal
Gm70804	predicted gene, 70804	1965 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	1984 bp distal
Rr413231	regulatory region 413231	1623 bp distal
Rr413232	regulatory region 413232	483 bp distal
Rr413233	regulatory region 413233	1559 bp distal
Rr413234	regulatory region 413234	1848 bp proximal
Tssr7442	transcription start site region 7442	1810 bp downstream
Tssr7443	transcription start site region 7443	1722 bp downstream
Tssr7444	transcription start site region 7444	1665 bp downstream
Tssr7445	transcription start site region 7445	1589 bp downstream
Tssr7446	transcription start site region 7446	1546 bp downstream
Tssr7447	transcription start site region 7447	1262 bp downstream
Ttll4	tubulin tyrosine ligase-like family, member 4	within coordinates