rs248831808 SNP Detail

Summary

• ID
  rs248831808
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44510757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAATTA ACCAAACAAC
  AACAGTCACT TACAACAGTA AAACAAGACG CCCCAGTTCT CTTTCCCATG GCGATCGATC
  ATTTCTAATA GCCGCGAGTC CCAATCAGGG ACCCTTCTCC GCTTGCTTGC CGTTTGTGTA
  GAAAATTAGC GTGCTGAGGT CGGGTACCAT CAGCTGGCCG AGGCTAGGGA GTTTCCTGGA
  S
  GGTGGCTGAG GCAGCGAACA ACCTAGCATG CCTTCATGCA TTTCCACCTG CCCACTTACT
  TGCGAGATTT GGAGGCGTAG TCGGAGCCTA TTCCCACGCC CTGGCCTTCG AAGTAGTAAA
  TTGCGCACTT TCTCTTTAAC CCCGTCTCAT TTCACCCACG GTCACGTTTC CTCTCCACGC
  AGCGCGTTTC AAGTGGAGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201300	MGP_WTSI_11_44433432	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248831808					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201300	MGP_WTSI_11_44433432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44510757 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2763	CpG island 2763			1301 bp distal
Cpgi2764	CpG island 2764			within coordinates
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175			338 bp distal
Ebf1	early B cell factor 1			Intron
				Noncoding-Transcript-Variant
Rr445654	regulatory region 445654			1214 bp distal
Tssr3469	transcription start site region 3469			887 bp upstream
Tssr3470	transcription start site region 3470			1680 bp upstream
Tssr101040	transcription start site region 101040			1995 bp downstream
Tssr101041	transcription start site region 101041			1795 bp downstream
Tssr101042	transcription start site region 101042			1726 bp downstream
Tssr101043	transcription start site region 101043			1707 bp downstream
Tssr101044	transcription start site region 101044			1339 bp downstream
Tssr101045	transcription start site region 101045			1220 bp upstream
Tssr101046	transcription start site region 101046			1252 bp upstream
Tssr101047	transcription start site region 101047			1266 bp upstream
Tssr101048	transcription start site region 101048			1281 bp upstream
Tssr107570	transcription start site region 107570			1861 bp upstream